Cluster | HMM | Locus | Description | COG | Pfam | Smart | Swiss-Prot |
3841 |
|
| putative tail fiber protein|Prophage tail fibre N-terminal. This domain is found at the N-terminus of prophage tail fibre proteins; pfam08400 | | PF08400(6) | | |
3907 |
|
| hypothetical protein|Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; COG1752 | COG1752(7) | PF0028(2) | | |
4222 |
|
| hypothetical protein | COG3026(4) | | | |
4599 |
|
| putative phosphotransferase system (PTS), fructose-specific|PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes; cd00211 | | | | |
4608 |
|
| transcriptional regulator, TetR family|transcriptional regulator BetI; PRK00767|Bacterial regulatory proteins, tetR family; pfam00440 | | PF00440(6) | | |
4923 |
|
| MarR-family transcriptional regulatory protein|Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; cl00088 | | | | |
4931 |
|
| hypothetical protein | | | | |
5275 |
|
| hypothetical protein YajF (ROK family protein)|Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; COG1940|fructokinase; PRK09557, | COG1940(5) | | | |
5282 |
|
| hypothetical membrane protein|Domain of unknown function (DUF477). The function of this presumed domain is unknown. It is found in both eukarya and eubacteria; pfam04536 | | PF04536(5) | | |
5534 |
|
| conserved hypothetical protein|Protein of unknown function (DUF1524); pfam07510 | COG1479(5)|COG3586(5) | PF07510(5) | | |
5539 |
|
| capsule export protein KpsC|Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]; COG3563 | COG3563(4) | | | |
5541 |
|
| putative transcriptional antiterminator protein|CAT RNA binding domain. This RNA binding domain is found at the amino terminus of transcriptional antitermination proteins such as BglG, SacY and LicT. These proteins control the expression of sugar metabolising operons in Gram+ and Gram- bacteria; pfam03123 | COG3711(1) | PF03123(3)|PF00874(3), PF00874(1) | | |
5542 |
|
| putative aminotransferase | COG1168(3) | | | |
5543 |
|
| hypothetical posphosugar isomerase|Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]; COG0794 | COG0794(4) | | | |
5549 |
|
| hypothetical protein | | | | |
5913 |
|
| invasion protein IbeA, | COG0644(1) | PF01946(1) | | |
5915 |
|
| hypothetical protein|Uncharacterized protein conserved in bacteria [Function unknown]; COG3181 | COG3181(3) | | | |
5916 |
|
| hypothetical isochorismatase family protein YcdL|Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle; cd00431 | | | | |
5917 |
|
| hypothetical protein YahE | | | | |
5918 |
|
| carbamate kinase-like protein YahI|AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP; cd04235 | | | | |
5919 |
|
| hypothetical protein|amidase; PRK08186 | | | | |
5920 |
|
| putative permease|cytosine permease; PRK11017 | | | | |
5921 |
|
| transcriptional regulator, LysR family|predicted DNA-binding transcriptional regulator; PRK11074|Bacterial regulatory helix-turn-helix protein, lysR family; pfam00126|LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins; pfam03466 | | PF00126(3)|PF03466(3) | | |
5922 |
|
| putative transcriptional antiterminator|HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins; pfam08279|Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions; pfam05043|Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]; COG3414 | COG3414(3) | PF08279(3)|PF05043(3)|PF00874(3) | | |
5923 |
|
| putative fructose-bisphosphate aldolase class-II|Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases; cd00947 | | | | |
5925 |
|
| polysialic acid transport protein KpsM|ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; COG1682 | COG1682(3) | | | |
5926 |
|
| polysialic acid transport ATP-binding protein KpsT|Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters; cd03369|ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export; cd03220 | COG4555(1) | | | |
5927 |
|
| capsule polysaccharide export protein KpsS|Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]; COG3562|Capsule polysaccharide biosynthesis protein. This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB; pfam05159 | COG3562(3) | PF05159(3) | | |
5928 |
|
| 3-deoxy-manno-octulosonate cytidylyltransferase|Nucleotidyl transferase. This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars; cl00502 | | | | |
5929 |
|
| polysialic acid transport protein KpsD precursor|Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]; COG1596|Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export; pfam02563 | COG1596(2) | PF02563(3) | | |
5930 |
|
| polysialic acid capsule expression protein KpsF|D-arabinose 5-phosphate isomerase; Provisional; PRK10892|KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5...; cd05014|This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway...; cd04604 | | | | |
5934 |
|
| hypothetical protein | | | | |
5950 |
|
| hypothetical protein,, | | | | |
6256 |
|
| hypothetical protein | | | | |
6364 |
|
| putative transcriptional regulator|Transcriptional regulator [Transcription]; COG1414|IclR helix-turn-helix domain; pfam09339|Bacterial transcriptional regulator. This family of bacterial transcriptional regulators includes the glycerol operon regulatory protein and acetate operon repressor both of which are members of the iclR family; pfam01614 | COG1414(3) | PF09339(3)|PF01614(3) | | |
6365 |
|
| 2-oxo-3-deoxygalactonate kinase|2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; COG3734 | COG3734(3) | | | |
6366 |
|
| hypothetical protein,, | | | | |
6376 |
|
| sialic acid synthase NeuB|Sialic acid synthase [Cell envelope biogenesis, outer membrane]; COG2089|NeuB family. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc); pfam03102|SAF domain. This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins; pfam08666 | COG2089(1) | PF03102(1)|PF08666(1) | | |
6377 |
|
| acylneuraminate cytidylyltransferase|Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7; pfam02348|NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases; cd01841 | | PF02348(1) | | |
6378 |
|
| polysialic acid biosynthesis protein P7|UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc; pfam02350 | | PF02350(1) | | |
6389 |
|
| hypothetical protein | | | | |
6409 |
|
| hypothetical protein | | | | |
6417 |
|
| hypothetical protein | | | | |
6419 |
|
| hypothetical protein | | | | |
6423 |
|
| putative bacterial regulatory protein, MerR family|Predicted transcriptional regulator [Transcription]; COG2944 | COG2944(3) | | | |
6424 |
|
| hypothetical protein | | PF06296(1) | | |
6443 |
|
| putative cobalamin synthesis protein|The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase; cd03112|Cobalamin synthesis protein cobW C-terminal domain; pfam07683 | | PF07683(3) | | |
6678 |
|
| hypothetical protein YjgX (putative sulfatase)|Sulfatase; pfam00884 | | PF00884(3) | | |
6767 |
|
| C4-dicarboxylate-binding protein|TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]; COG1638 | COG1638(3) | | | |
6768 |
|
| C4-dicarboxylate transporter small subunit|TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]; COG3090 | COG3090(3) | | | |
6769 |
|
| C4-dicarboxylate transporter large subunit|DctM-like transporters. This family contains a diverse range of predicted transporter proteins. Including the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease; pfam06808 | | PF06808(3) | | |
6771 |
|
| putative conserved protein|KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site; cd00452 | | | | |
6772 |
|
| hypothetical protein,, | | | | |
6777 |
|
| hypothetical protein (hypothetical flavodoxin)|Multimeric flavodoxin WrbA [General function prediction only]; COG0655 | COG0655(3) | | | |
6778 |
|
| hypothetical beta-lactamase-related protein|Metallo-beta-lactamase superfamily; pfam00753 | | PF00753(3) | | |
6818 |
|
| Hypothetical protein | | | | |
6822 |
|
| Hypothetical protein|LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif; pfam01726|Residues 12 to 119 of 119 are 95.37 pct identical to residues 1 to 108 of 108 from GenPept.129 : >gb|AAL89444.1| (U82619) unknown [Shigella flexneri bacteriophage V] | | PF01726(3) | | |
7129 |
|
| protein PapJ precursor | | | | |
7130 |
|
| PapK fimbrial adapter precursor|Fimbrial protein; pfam00419, | | PF00419(4) | | |
7131 |
|
| PapE protein|Fimbrial protein; pfam00419, | | PF00419(4) | | |
7132 |
|
| PapF protein|P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; COG3539 | COG3539(4) | | | |
7133 |
|
| PapG|PapGII-like_RBD domain; PapG class II receptor binding domain; PapG adhesin located at the tip of the P pilus mediates the attachment of uropathogenic Escherichia coli to the uroepithelium of the human kidney; PapG has a C-terminal pilin region with a ch; cd00239 | | PF03628(4) | | |
7161 |
|
| hypothetical protein | | | | |
7355 |
|
| transcriptional regulator MarR family (PapX protein)|DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; PRK10870 | | | | |
7379 |
|
| hypothetical protein|Plasmid maintenance system killer protein [General function prediction only]; COG3549 | COG3549(2) | | | |
7765 |
|
| hypothetical protein|pyruvate formate lyase II activase; PRK10076|Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA; cd01916 | | PF04055(1) | | |
7766 |
|
| hypothetical protein | | | | |
7767 |
|
| hypothetical protein | | | | |
7772 |
|
| hypothetical protein | | | | |
7773 |
|
| hypothetical protein | | | | |
7802 |
|
| hypothetical protein | | | | |
7973 |
|
| putative carnitine transporter CniT|Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]; COG1292 | COG1292(1) | | | |
7974 |
|
| putative DHA kinase PgdK|dihydroxyacetone kinase, C-terminal domain; PRK10005 | | | | |
7975 |
|
| hypothetical protein, | | | | |
7982 |
|
| NeuE protein|Capsule polysaccharide biosynthesis protein. This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB; pfam05159 | | PF05159(1) | | |
7983 |
|
| poly-alpha-2,8 sialosyl sialyltransferase|Alpha-2,8-polysialyltransferase (POLYST). This family contains the bacterial enzyme alpha-2,8-polysialyltransferase (EC:2.4.99.-) (approximately 500 residues long); pfam07388 | | PF07388(1) | | |
7984 |
|
| hypothetical protein|Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements; cd01516 | | | | |
7986 |
|
| Hypothetical protein | | | | |
8008 |
|
| F1C minor fimbrial subunit protein G presursor|Fimbrial protein; pfam00419 | | PF00419(3) | | |
8022 |
|
| hypothetical protein, | | | | |
8023 |
|
| hypothetical protein, | | | | |
8028 |
|
| hypothetical protein|Uncharacterized conserved protein [Function unknown]; COG4104|Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the 'double-glycine' leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic); cd02259, | COG4104(2) | | | |